Publication - CD Genomics

Article	Journal	Published	Tags	Species
A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0	Data in Brief	2024	PacBio SMRT Sequencing	Tetanops myopaeformis
Vaccination with a Protective Ipa Protein-Containing Nanoemulsion Differentially Alters the Transcriptomic Profiles of Young and Elderly Mice following Shigella Infection	Vaccines	2024	RNA sequencing	Mice
StarD5 levels of expression correlate with onset and progression of steatosis and liver fibrosis	Gastrointestinal and Liver Physiology	2024	RNA-Seq	Mice
Multi-species biofilms of environmental microbiota isolated from fruit packing facilities promoted tolerance of Listeria monocytogenes to benzalkonium chloride	Biofilm	2024	16S Amplicon Sequencing	Bacteria
Genes of Salmonella enterica Serovar Enteritidis Involved in Biofilm Formation	Applied Microbiology	2024	Whole-genome sequencing	Salmonella enterica
The first high-quality genome assembly and annotation of Lantana camara, an important ornamental plant and a major invasive species	Horticulture Advances	2024	Genomics Sequencing	Lantana camara
Genome sequence, antibiotic resistance genes, and plasmids in a monophasic variant of Salmonella typhimuriumisolated from retail pork	Microbiol Resour Announc	2024	Next generation sequencing	Salmonella typhimurium
Eubacterium rectale detoxification mechanism increases resilience of the gut environment	bioRxiv	2024	RNA sequencing	Eubacterium rectale
A high-density genetic linkage map and QTL identification for growth traits in dusky kob (Argyrosomus japonicus)	Aquaculture	2024	2b-RAD sequencing	Argyrosomus japonicus
Repeated loss of function at HD mating-type genes and of recombination suppression without mating-type locus linkage in anther-smut fungi	bioRxiv	2024	RNA sequencing	Fungi
Characterization of Microbotryum lychnidis-dioicae Secreted Effector Proteins, Their Potential Host Targets, and Localization in a Heterologous Host Plant	Journal of Fungi	2024	cDNA Library Construction	Microbotryum lychnidis-dioicae
An independent origin of an annual life cycle in a North American killifsh species	Biological Journal of the Linnean Society	2024	Mitochondrial DNA (mtDNA) Sequencing	Millerichthys robustus
Blocking IL-17A prevents oxycodone-induced depression-like effects and elevation of IL-6 levels in the ventral tegmental area and reduces oxycodone-derived physical dependence in rats	Brain, Behavior, and Immunity	2024	16S/18S/ITS Amplicon Sequencing	Bacteria
A longevity-specific bank of induced pluripotent stem cells from centenarians and their offspring	bioRxiv	2024	DNA Methylation Microarray	Human
Threonine fuels glioblastoma through YRDC-mediated codon-biased translational reprogramming	Nature Cancer	2024	Next generation sequencing	Human
The chromosome-scale genome and the genetic resistance machinery against insect herbivores of the Mexican toloache, Datura stramonium	G3: Genes, Genomes, Genetics	2024	ddRAD-sequencing	Datura stramonium
Role of the histone variant H2A.Z.1 in memory, transcription, and alternative splicing is mediated by lysine modification	Neuropsychopharmacology	2024	RNA sequencing	Human
Exploiting DNA methylation in cassava under water deficit for crop improvement	PLoS ONE	2024	MethylRAD-Seq	Cassava
Nutrient structure dynamics and microbial communities at the water–sediment interface in an extremely acidic lake in northern Patagonia	Frontiers in Microbiology	2024	shotgun metagenomic sequencing	Bacteria
Cholestenoic acid as endogenous epigenetic regulator decreases hepatocyte lipid accumulation in vitro and in vivo	Gastrointestinal and Liver Physiology	2024	WGBS, RNA sequencing	Human hepatocyte
Bacterial communities of Cassiopea in the Florida Keys share major bacterial taxa with coral microbiomes	bioRxiv	2024	Full-Length 16S Amplicon Sequencing	Bacteria
Production of a Bacteriocin Like Protein PEG 446 from Clostridium tyrobutyricum NRRL B-67062	Probiotics and Antimicrobial Proteins	2024	PacBio SMRT sequencing	Clostridium tyrobutyricum
Skin Microbial Community Associated to Strawberry Disease in Farmed Rainbow Trout (Oncorhynchus mykiss Walbaum, 1792)	Microorganisms	2024	RNA sequencing	Oncorhynchus mykiss
Gene functions of the Ambystoma altamirani skin microbiome vary across space and time but potential antifungal genes are widespread and prevalent	Microbial Genomics	2024	shotgun metagenomic sequencing	Microbes
KMT2A associates with PHF5A-PHF14-HMG20A-RAI1 subcomplex in pancreatic cancer stem cells and epigenetically regulates their characteristics	nature communications	2023	ChIP-seq	Human
Simultaneous carbon catabolite repression governs sugar and aromatic co-utilization in Pseudomonas putida M2	Applied and Environmental Microbiology	2023	Small RNA sequencing	Pseudomonas putida
Understanding the heterogeneity of alloreactive natural killer cell function in kidney transplantation	bioRxiv	2023	HLA typing	Human Natural Killer (NK) cells
The HLA class I immunopeptidomes of AAV capsid proteins	Frontiers in Immunology	2023	HLA typing	Human
Influence of dietary oils rich in omega-6 or omega-3 fatty acids on rumen microbiome of dairy cows	Translational Animal Science	2023	DNA sequencing	Microbes
Blood RNA-Seq profiling reveals a set of circular RNAs differentially expressed in frail individuals	Immunity & Ageing	2023	RNA sequencing	Human blood
Elucidating the effects of organic vs. conventional cropping practice and rhizobia inoculation on rhizosphere microbial diversity and yield of peanut	Environmental Microbiome	2023	16S Amplicon Sequencing	Bacteria
Genetic Determinants of Acinetobacter baumannii Serum-Associated Adaptive Efflux-Mediated Antibiotic Resistance	Antibiotics	2023	RNA sequencing	Acinetobacter baumannii
The counterpart congenital overgrowth syndromes Beckwith-Wiedemann Syndrome in human and large offspring syndrome in bovine involve alterations in DNA methylation, transcription, and chromatin configuration	bioRxiv	2023	Whole genome bisulfite sequencing (WGBS), total RNA-seq	Human and bovine
The Restriction–Modification Systems of Clostridium carboxidivorans P7	Microorganisms	2023	DNA Methylation sequencing	Clostridium carboxidivorans
Limitation of amino acid availability by bacterial populations during enhanced colitis in IBD mouse model	mSystems	2023	RNA sequencing	Mice, Microbes
Insights into the chaotropic tolerance of the desert cyanobacterium Chroococcidiopsis sp. 029 (Chroococcidiopsales, Cyanobacteria)	Journal of Phycology	2023	Next generation sequencing	Chroococcidiopsis
Distinct functions of wild-type and R273H mutant Δ133p53α differentially regulate glioblastoma aggressiveness and therapy-induced senescence	Research Square	2023	Next generation sequencing	Human
A recombination-resistant genome for live attenuated and stable PEDV vaccines by engineering the transcriptional regulatory sequences	Journal of Virology	2023	RNA sequencing	Neonatal piglets
Exploring phenotypic and genetic variability in hemp (Cannabis sativa)	bioRxiv	2023	genotyping by sequencing (GBS)	Cannabis sativa
Small but significant genetic differentiation among populations of Phyllachora maydis in the midwestern United States revealed by microsatellite (SSR) markers	bioRxiv	2023	SSR amplification and genotyping	Corn
Limited impact of weathered residues from the Deepwater Horizon oil spill on the gut-microbiome and foraging behavior of sheepshead minnows (Cyprinodon variegatus)	Journal of Toxicology and Environmental Health	2023	shotgun metagenomic sequencing,16S Amplicon Sequencing	Cyprinodon variegatus
Untangling the Role of Pathobionts from Bacteroides Species in Inflammatory Bowel Diseases	bioRxiv	2023	Full-Length 16S Amplicon Sequencing	Microbes
An assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TpSBRM_v1.0	bioRxiv	2023	DNA isolation and sequencing	T. myopaeformis
Shifts in the rhizosphere microbiome and exudation profile of avocado (Persea americana Mill.) during infection by Phytophthora cinnamomi and in presence of a biocontrol bacterial strain	CABI Agriculture and Bioscience	2023	16S rRNA sequencing, ITS sequencing	Microbes
Elucidation of the mescaline biosynthetic pathway in peyote (Lophophora williamsii)	The Plant Journal	2023	Bioinformatics	Lophophora williamsii
Phenotypic and Draft Genome Sequence Analyses of a Paenibacillus sp. Isolated from the Gastrointestinal Tract of a North American Gray Wolf (Canis lupus)	Appl. Microbiol	2023	Microbial Whole Genome Sequencing	Paenibacillus
Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism	Nucleic Acids Research	2023	16S Sanger Sequencing	Cutibacterium acnes
Risk of Alzheimer’s Disease is Associated with Longitudinal Changes in Plasma Biomarkers in the Multiethnic Washington Heights, Inwood Columbia Aging Project Cohort	medRxiv	2023	APOE genotyping	Human Plasma
Endogenous expression of inactive lysine deacetylases reveals deacetylation-dependent cellular mechanisms	plos one	2023	RNA-seq	Cell
Mitochondrial DNA Haplogroups and Variants Predispose to Chagas Disease Cardiomyopathy	Biology and Life Sciences, Parasitology	2023	Hi-SNPseq	Human
Skin Microbiota of Salmonids: A Procedure to Examine Active Bacterial Populations Using an RNA-Based Approach	Appl. Microbiol	2023	RNA-seq	Skin Microbiota
A chromosome-scale and haplotype-resolved genome assembly of tetraploid blackberry (Rubus L. subgenus Rubus Watson)	bioRxiv	2023	RNA-seq	Plant
Sex hormones, sex chromosomes, and microbiota: identification of Akkermansia muciniphila as an estrogen-responsive bacterium	Microbiota and Host	2023	Bacterial whole genome sequencing	Bacteria
Broad-Spectrum, Potent, and Durable Ceria Nanoparticles Inactivate RNA Virus Infectivity by Targeting Virion Surfaces and Disrupting Virus–Receptor Interactions	Molecules	2023	Virus RNA-seq	Virus
Highly-conserved regulatory activity of the ANR family in the virulence of diarrheagenic bacteria through interaction with master and global regulators	Scientific Reports	2023	DNA sequencing	Bacteria
FAK loss reduces BRAFV600E-induced ERK phosphorylation to promote intestinal stemness and cecal tumor formation	Research Square	2023	RNA sequencing	Mice
Genomic Patterns of Iberian Wild Bees Reveal Levels of Diversity, Differentiation and Population Structure, Supporting the “Refugia within Refugia” Hypothesis	Diversity	2023	RAD sequencing	Wild Bees
IL-10-producing memory B regulatory cells as a novel target for HLA-G to prolong human kidney allograft survival	Human Immunology	2023	RNA sequencing	Human
Abundance and phylogenetic distribution of eight key enzymes of the phosphorus biogeochemical cycle in grassland soils	Environmental Microbiology	2023	Metagenomic sequencing	Soil microorganisms
Pinpointing Rcs3 for frogeye leaf spot resistance and tracing its origin in soybean breeding	Molecular Breeding	2023	Next generation sequencing	Soybean
Hybrid Genome Assembly of Berkeleyomyces rouxiae, an Emerging Cannabis Fungal Pathogen Causing Black Root-Rot in an Aeroponic Facility	Plant Disease	2023	DNA sequencing	erkeleyomyces rouxiae
Curtobacterium allii sp. nov., the actinobacterial pathogen causing onion bulb rot	Antonie van Leeuwenhoek	2023	DNA sequencing	Curtobacterium
In the land of the blind: exceptional subterranean speciation of cryptic troglobitic spiders of the genus Tegenaria (Araneae: Agelenidae) in Israel	Molecular Phylogenetics and Evolution	2023	ddrad-seq	Spider
Rapid evolution of competitive ability in Giant Foxtail (Setaria faberi) over 34 years	Weed Science	2023	Genotyping-by-sequencing	Setaria faberi
Sorgoleone degradation by sorghum-associated bacteria; an opportunity for enforcing plant growth promotion	bioRxiv	2023	whole-genome sequencing	Bacteria
An efficient method to prepare barcoded cDNA libraries from plant callus for long-read sequencing	Methods Protoc	2023	Bioinformatics
Increased Production of Pathogenic, Airborne Fungal Spores upon Exposure of a Soil Mycobiota to Chlorinated Aromatic Hydrocarbon Pollutants	Microbiology Spectrum	2023	Genotyping	A. fumigatus
Natural Recombination among Type I Restriction-Modification Systems Creates Diverse Genomic Methylation Patterns among Xylella fastidiosa Strains	Microbiology Spectrum	2023	Next generation sequencing	X. fastidiosa
A chromosome-level genome resource for studying virulence mechanisms and evolution of the coffee rust pathogen Hemileia vastatrix	bioRxiv	2022	PacBio Sequel II sequencing	Hemileia vastatrix
Methylation in the CHH Context Allows to Predict Recombination in Rice	Int. J. Mol. Sci	2022	Bisulfite-seq	Rice
Identification of the genetic elements involved in biofilm formation by Salmonella enterica serovar Tennessee using mini-Tn10 mutagenesis and DNA sequencing	Food Microbiology	2022	whole-genome sequencing	Salmonella enterica
Genetic Analysis Leads to Range Extension of the Olympic Shrew (Sorex rohweri) to the Eastern Slopes of the Cascade Range in Washington State	Western Wildlife	2022	DNA sequencing	Sorex rohweri
Phylogenetic assessment of the Metamasius hemipterus species complex (Coleoptera, Curculionidae, Dryophthorinae)	Molecular Phylogenetics and Evolution	2022	Library preparation and sequencing	Metamasius
Human Immature Dental Pulp Stem Cells Did Not Graft into a Preexisting Human Lung Adenocarcinoma	Case Reports in Oncology	2022	RNA sequencing	Human Lung Adenocarcinoma
Chaperone-mediated autophagy controls proteomic and transcriptomic pathways to maintain glioma stem cell activity	MOLECULAR CELL BIOLOGY	2022	RNA sequencing	Mice
IIb-RAD-sequencing coupled with random forest classification indicates regional population structuring and sex-specific differentiation in salmon lice (Lepeophtheirus salmonis)	Ecology and Evolution	2022	paired-end sequencing	Lice (L. salmonis)
Pseudomonas uvaldensis sp. nov., a bacterial pathogen causing onion bulb rot	Microbiology Society	2022	Bacterial sequencing	Bacterial
Identification of a gut commensal that compromises the blood pressure-lowering effect of ester angiotensin-converting enzyme inhibitors	Hypertension	2022	16S rRNA sequencing	Gut microbes
Chaperone-mediated autophagy controls proteomic and transcriptomic 2 pathways to maintain glioma stem cell activity	Cancer Res	2022	RNA sequencing	Human
Haploidy and aneuploidy in switchgrass mediated by misexpression of CENH3	GENOME EDITING AND CHROMOSOME ENGINEERING IN PLANTS	2022	Novaseq PE150 sequencing	Plant
Complete Genome Sequences of Four Canadian Mycoplasma bovis Strains Isolated from Bison and Cattle	ASM Journals	2021	Genomic sequencing	Mycoplasma bovis
Revival of Anhydrobiotic Cyanobacterium Biofilms Exposed to Space Vacuum and Prolonged Dryness: Implications for Future Missions beyond Low Earth Orbit	Astrobiology	2021	Illumina Sequencing	Biofilms
Identifying regulators of parental imprinting by CRISPR/Cas9 screening in haploid human embryonic stem cells	Nature	2021	DNA sequencing	Human
Investigating interactive effects of worry and the catechol-o-methyltransferase gene (COMT) on working memory performance	Cogn Affect Behav Neurosci	2021	SNaPshot genotyping	Human saliva
Genome sequencing, annotation and exploration of the SO2-tolerant non-conventional yeast Saccharomycodes ludwigii	BMC Genomics	2021	DNA sequencing	yeast
Genetic Modifiers of Oral Nicotine Consumption in Chrna5 Null Mutant Mice	Front. Psychiatry	2021	SNP genotyping	Mutant Mice
Comparative genomic analysis of Canadian Mycoplasma bovis strains isolated from Bison and Cattle	Comparative Immunology, Microbiology and Infectious Diseases	2021	Bioinformatics	Mycoplasma bovis
Transferrable protection by gut microbes against STING-associated lung disease	Cell Reports	2021	18S sequencing	Gut microbes
Variable Response of Norepinephrine Transporter to Traumatic Stress and Relationship to Hyperarousal	Front. Behav. Neurosci	2021	DNA methylation sequencing	Rats
Microbial adaptation and response to high ammonia concentrations and precipitates during anaerobic digestion under psychrophilic and mesophilic conditions	Water Research	2021	Whole genome sequencing	Microbes
Long-term effects of dietary supplementation with olive oil and hydrogenated vegetable oil on the rumen microbiome of dairy cows	Microorganisms	2021	DNA sequencing	Rumen Microbiome
Genome-Wide Identification and Bioinformatics Characterization of Superoxide Dismutases in the Desiccation-Tolerant Cyanobacterium Chroococcidiopsis sp. CCMEE 029	Frontiers in Microbiology	2021	Genome sequencing	Chroococcidiopsis sp. CCMEE 029
Harnessing the genetic plasticity of Porcine Circovirus type 2 to target suicidal replication	Viruses	2021	DNA sequencing	Porcine circovirus
Evaluating the role of coevolution in a horizontally transmitted mutualism	bioRxiv	2021	DNA sequencing	Bacteria
Chitinase Chit62J4 Essential for Chitin Processing by Human Microbiome Bacterium Clostridium paraputrificum J4	Molecules	2021	Bioinformatics	Human Microbiome
Association of the prophage BTP1 and the prophage encoded gene, bstA, with anti-virulence of Salmonella	Pathogens and Disease	2020	Whole-genome sequencing	Salmonella
Complete Genome Sequence of the Lignocellulose-Degrading Actinomycete Streptomyces albus CAS922	Microbiology Resource Announcements	2020	Genome sequencing using the Oxford Nanopore sequencing platform	Streptomyces albus CAS922
Mitochondrial genome of the Silvertip shark Carcharhinus albimarginatus from the British Indian Ocean Territory	Mitochondrial DNA Part B Resources	2020	Mitochondrial genome sequencing	Silvertip shark
The efects of atrazine on the microbiome of the eastern oyster- Crassostrea virginica	Crassostrea virginica. Sci Rep	2020	16S sequencing;Statistical analysis;	Microbiome of C. virginica
Change in Weight, BMI, and Body Composition in a Population-Based Intervention Versus Genetic-Based Intervention- The NOW Trial	Obesity	2020	MassARRAY SNP genotyping	Human
Whole-Transcriptome Analysis in Peripheral Blood Mononuclear Cells from Patients with Lipid-Specific Oligoclonal	Biomedicines	2020	Next-generation sequencing	Human

Article	Journal	Published	Tags	Species
Streptomyces buecherae sp. nov., an actinomycete isolated from multiple bat species	Antonie van Leeuwenhoek	2020	PacBio sequencing and library preparation	Actinomycete
Complete mitochondrial genome of the gray reef shark, Carcharhinus amblyrhynchos(Carcharhiniformes-Carcharhinidae)	Mitochondrial DNA Part B Resources	2020	mitochondrial genome sequencing	Gray reef shark
Metagenomics for taxonomy profiling- tools and approaches	Bioengineered	2020	metagenomic analysis	Bacteria
DNA methylome reprogramming in glioblastoma	nature cancer	2020	DNA methylome	human
Eye color prediction using the IrisPlex system: a limited pilot study in the Iraqi population	Egyptian Journal of Forensic Sciences	2020	MassARRAY SNP genotyping	human
Acidithiobacillus ferrianus sp. nov.: an ancestral extremely acidophilic and facultatively anaerobic chemolithoautotroph	Extremophiles	2020.1	16S Amplicon Sequencing	Environmental sample
Isolation and characterization of new human carrier peptides from two important vaccine immunogens	Vaccine	2020.2	HLA Typing	human
Draft Genome Sequence and Annotation of Paracoccus versutus MAL 1HM19, a Nitrate-Reducing, Sulfide-Oxidizing Bacterium	Microbiology Resource Announcements	2020.3	Microbial Whole Genome Sequencing	Paracoccus versutus MAL 1HM19
Integration of whole-genome DNA methylation data with RNA sequencing data to identify markers for bull fertility	Animal Genetics	2020.4	Whole Genome Bisulfite Sequencing	bull
DNA methyltransferase implicated in the recovery of conidiation, through successive plant passages, in phenotypically degenerated Metarhizium	Applied Microbiology and Biotechnology	2020.4	Whole Genome Bisulfite Sequencing	Metarhizium
Association of the prophage BTP1 and the prophage encoded gene, bstA, with anti-virulence of Salmonella Typhimurium ST313	Pathog Dis.	2020.4	Microbial Whole Genome Sequencing	Salmonella Typhimurium
Genome Analysis and Replication Studies of the African Green Monkey Simian Foamy Virus Serotype 3 Strain FV2014	Viruses	2020.4	Viral Genome Sequencing	simian foamy virus
Atrazine Removal from Municipal Wastewater Using a Membrane Bioreactor	Int. J. Environ. Res. Public Health	2020.4	16S Amplicon Sequencing	Environmental sample
Complete Genome Sequence of the Lignocellulose-Degrading Actinomycete Streptomyces albus CAS922	Microbiology Resource Announcements	2020.5	Bacterial Whole Genome de novo Sequencing；Oxford Nanopore sequencing	Streptomyces albus CAS922
Mitochondrial genome of the Silvertip shark, Carcharhinus albimarginatus, from the British Indian Ocean Territory	Mitochondrial DNA Part B	2020.5	mitochondrial genome	Carcharhinus albimarginatus
Carotenoid Raman Signatures Are Better Preserved in Dried Cells of the Desert Cyanobacterium Chroococcidiopsis than in Hydrated Counterparts after High-Dose Gamma Irradiation	life	2020.6	Microbial Whole Genome Sequencing	Chroococcidiopsis sp. CCMEE 029
Biomarker Preservation and Survivability Under Extreme Dryness and Mars-Like UV Flux of a Desert Cyanobacterium Capable of Trehalose and Sucrose Accumulation	Frontiers in Astronomy and Space Sciences	2020.7	Microbial Whole Genome Sequencing	Chroococcidiopsis sp. CCMEE 029
The efects of atrazine on the microbiome of the eastern oyster: Crassostrea virginica	Scientific Reports	2020.7	16S Amplicon Sequencing	Environmental sample
Change in Weight, BMI, and Body Composition in a Population-Based Intervention Versus Genetic-Based Intervention: The NOW Trial	CLINICAL TRIALS AND INVESTIGATIONS	2020.8	MassARRAY SNP genotyping	human
Whole-Transcriptome Analysis in Peripheral Blood Mononuclear Cells from Patients with Lipid-Specific Oligoclonal IgM Band Characterization Reveals Two Circular RNAs and Two Linear RNAs as Biomarkers of Highly Active Disease	biomedicines	2020.8	RNA-seq	human
Genomic and chemical evidence for local adaptation in resistance to different herbivores in Datura stramonium	Evolution	2020.9	ddRAD-seq	Datura stramonium
Microbiota of the Digestive Gland of Red Abalone (Haliotis rufescens) Is Affected by Withering Syndrome	microorganisms	2020.9	16S Amplicon Sequencing	Intestinal flora
Streptomyces buecherae sp. nov., an actinomycete isolated from multiple bat species	Antonie van Leeuwenhoek	2020.9	Bacterial Whole Genome de novo Sequencing	Streptomyces buecherae sp. nov.
Comparative Evolutionary Patterns of Burkholderia cenocepacia and B. multivorans During Chronic Co-infection of a Cystic Fibrosis Patient Lung	Front. Microbiol.	2020.9	Microbial Whole Genome Sequencing	Burkholderia cenocepacia and B. multivorans
Complete mitochondrial genome of a gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae), from the Western Indian Ocean	MITOCHONDRIAL DNA PART B	2020.10	mitochondrial genome	Carcharhinus amblyrhynchos
RNA-Seq profiling of leukocytes reveals a sex-dependent global circular RNA upregulation in multiple sclerosis and 6 candidate biomarkers	Human Molecular Genetics	2020.10	RNA-seq	human
Type I Interferon acts as a major barrier to the establishment of infectious bursal disease virus (IBDV) persistent infections	Journal of Virology	2020.10	Viral Genome Sequencing	Infectious bursal disease virus
Hydrogen-Oxidizing Bacteria Are Abundant in Desert Soils and Strongly Stimulated by Hydration	American Society for Microbiology Journals	2020.11	Metagenomic Shotgun Sequencing	Environmental sample
The genetic legacy of fragmentation and overexploitation in the threatened medicinal African pepper-bark tree, Warburgia salutaris	scientific reports	2020.11	SSR development	Warburgia salutaris
Metagenomics for taxonomy profiling: tools and approaches	Bioengineered	2020.12	Metagenomic data analysis
Temporal genome-wide DNA methylation signature of post-smolt Pacific salmon challenged with Piscirickettsia salmonis	Epigenetics	2020.12	RRBS	Pacific salmon
Merkel Cell Polyomavirus Encodes Circular RNAs (circRNAs) Enabling a Dynamic circRNA/microRNA/mRNA Regulatory Network	American Society for Microbiology Journals	2020.12	CircRNA Sequencing	human
High-Density Mapping and Candidate Gene Analysis of Pl18 and Pl20 in Sunflower by Whole-Genome Resequencing	Int. J. Mol. Sci.	2020.12	Whole Genome Sequencing	sunflower
Molecular dissection of resistance gene cluster and candidate gene identification of Pl17 and Pl19 in sunflower by whole-genome resequencing	Scientific Reports	2019	Whole Genome Sequencing	sunflower
Genetic variants in the bipolar disorder risk locus SYNE1 that affect CPG2 expression and protein function	Molecular Psychiatry	2019.1	Targeted Region Sequencing	human
Phylogeny Characterization of Seb Gene Encoding Enterotoxins in Staphylococcus aureus Isolated from Raw Milk and Cheese	RESEARCH ARTICLE	2019.2	Sanger sequencing	Staphylococcus aureus
Immune tolerance attenuates gut dysbiosis, dysregulated uterine gene expression and high-fat diet potentiated preterm birth in mice	OBSTETRICS	2019.2	16S Amplicon Sequencing	Intestinal flora
Effect of Dietary Carbohydrate-to-Protein Ratio on Gut Microbiota in Atlantic Salmon (Salmo salar)	animals	2019.3	16S Amplicon Sequencing	Intestinal flora
Identification of diverse integron and plasmid structures carrying a novel carbapenemase among Pseudomonas species	Front. Microbiol.	2019.3	Bacterial Whole Genome de novo Sequencing	Pseudomonas aeruginosa
Generation of a highly attenuated strain of Pseudomonas aeruginosa for commercial production of alginate	Microbial biotechnology	2019.4	Microbial Whole Genome Sequencing	Pseudomonas aeruginosa
The Effect of Genetically Guided Mathematical Prediction and the Blood Pressure Response to Pharmacotherapy in Hypertension Patients	Clin Med Insights Cardiol.	2019.5	MassARRAY SNP Genotyping	human
Over-Expression of UV-Damage DNA Repair Genes and Ribonucleic Acid Persistence Contribute to the Resilience of Dried Biofilms of the Desert Cyanobacetrium Chroococcidiopsis Exposed to Mars-Like UV Flux and Long-Term Desiccation	Front. Microbiol.	2019.10	Microbial Whole Genome Sequencing	Chroococcidiopsis sp. CCMEE 029
Exploring Actinobacteria Associated With Rhizosphere and Endosphere of the Native Alpine Medicinal Plant Leontopodium nivale Subspecies alpinum	Front. Microbiol.	2019.11	16S Amplicon Sequencing	plant tissues
Investigation of the role of genes encoding zinc exporters zntA, zitB, and fieF during Salmonella Typhimurium infection	Front. Microbiol.	2018.1	Microbial Whole Genome Sequencing	Salmonella
Draft Genome Sequences of Anaplasma phagocytophilum, A. marginale, and A. ovis Isolates from Different Hosts	American Society for Microbiology Journals	2018.2	Whole Genome Sequencing	A. phagocytophilum (human), A. marginale (cattle), and A. ovis (goat)
Algal–bacterial synergy in treatment of winery wastewater	npj clean wate	2018.5	16S Amplicon Sequencing	Environmental sample
Neuropilin-1 promotes the oncogenic Tenascin-C/integrin β3 pathway and modulates chemoresistance in breast cancer cells	Research article	2018.5	RNA-seq	human
Downregulated PITX1 Modulated by MiR19a-3p Promotes Cell Malignancy and Predicts a Poor Prognosis of Gastric Cancer by Affecting Transcriptionally Activated PDCD5	Cell Physiol Biochem.	2018.5	ChIP-seq	human
Classification of genera of Pasteurellaceae using conserved predicted protein sequences	RESEARCH ARTICLE	2018.6	Microbial Whole Genome Sequencing	Avibacterium gallinarum and Avibacterium paragallinarum
Alternatively spliced variants in Atlantic cod (Gadus morhua) support response to variable salinity environment	Scientific Reports	2018.8	RNA-seq	Gadus morhua
Circular DNA tumor viruses make circular RNAs	PNAS	2018.11	CircRNA Sequencing	human
Embryonic origin and genetic basis of cave associated phenotypes in the isopod crustacean Asellus aquaticus	Scientific reports	2018.11	MassARRAY SNP Genotyping	Asellus aquaticus
Evaluating the impact of the biocontrol agent Trichoderma harzianum ITEM 3636 on indigenous microbial communities from field soils	Journal of Applied Microbiology	2018.11	16S/18S/ITS Amplicon Sequencing	Environmental sample
Putrescine biosynthesis and export genes are essential for normal growth of avian pathogenic Escherichia coli	BCM Microbiology	2018.12	Microbial Whole Genome Sequencing	Escherichia coli
Scanning indels in the 5q22.1 region and identification of the TMEM232 susceptibility gene that is associated with atopic dermatitis in the Chinese Han population	Gene	2017.3	MassARRAY SNP Genotyping	human
Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI	New phytologist	2017.5	Whole Genome Sequencing	Arabidopsis
Impact of the OATP1B1 c.521T>C single nucleotide polymorphism on the pharmacokinetics of exemestane in healthy post-menopausal female volunteers	ORIGINAL ARTICLE	2017.5	MassARRAY SNP Genotyping	human
Complete Genome Sequence of a Naturally Occurring Simian Foamy Virus Isolate from Rhesus Macaque (SFVmmu_K3T)	Genome Announc.	2017.8	Viral Genome Sequencing	simian foamy virus
Identification and Initial Characterization of the Effectors of an Anther Smut Fungus and Potential Host Target Proteins	Int J Mol Sci.	2017.11	cDNA Library Construction	yeast