Human leukocyte antigens (HLA) are the expression products of the human major histocompatibility complex (MHC), located in a region of approximately 4.0 M in length on the short arm of chromosome 6, 6p21.3, containing over 200 genes. HLA is classified into three major types based on different gene loci, including Class I, Class II and Class III. The high degree of variability in the sequence of HLA results in an unusually large number of HLA alleles.
Figure 1. Classification and structure of HLA genes.
As a segment of polymorphic regions involved in immune response, HLA polymorphisms are significantly associated with genetic susceptibility to many kinds of diseases. The purpose of HLA genotyping sequencing is primarily the identification of individual HLA class I and class II gene polymorphisms. Therefore, performing HLA typing sequencing is beneficial for the study of immune-related diseases, especially in immuno-oncology.
HLA typing sequencing workflow
Here, CD Genomics provides you with high-throughput and accurate NGS-based HLA typing sequencing services. Each of these steps is executed by our experienced experts under strict quality control and program settings. As shown in the diagram below, our workflow of HLA typing sequencing consists of the following main parts.
01. Sequencing sample requirements
Sample Type
DNA Amount
DNA Concentration
Purity
Total DNA from cells, blood, saliva, tissue, formalin-fixed samples, fresh frozen tissue samples, paraffin-embedded tissues, cancer liquid biopsies, etc.
≥ 200 ng
≥ 20 ng/μL
OD260/280=1.8 - 2.0;
no degradation,
no contamination
02. Library construction and NGS
Capture interval covering the entire HLA region with high coverage and depth
Illumina / MGI NGS platform for different types of HLA gene capture (Class I / Class II)
03. Bioinformatics Analysis
Sequencing data QC (e.g., removal of junction contamination and low-quality data)
Sequencing depth statistics, comparing to reference databases IMGT/HLA
NGS-based HLA typing sequencing is part of our immuno-oncology solution, which is primarily applied to research in the field of immuno-oncology. Since HLA-I class molecules are mainly responsible for endogenous antigen delivery, while HLA-II class molecules are mainly responsible for exogenous antigens. Therefore, in immuno-oncology research, more studies have focused on HLA-I.
HLA Typing: Key Types, Testing Methods, and Transplant Significance
CD Genomics is committed to combining professional project protocol guidance and standardized analysis processes to ensure that your project is performed accurately and quickly. If you are interested in CD Genomics' HLA typing sequencing services in the field of immuno-oncology, please feel free to contact us now.
For research purposes only, not intended for clinical diagnosis, treatment, or individual health assessments.
Inquiry
PDF Download
×
CD Genomics is transforming biomedical potential into precision insights through seamless sequencing and advanced bioinformatics.
We use cookies to understand how you use our site and to improve the overall user experience. This includes personalizing content and advertising. Read our Privacy Policy