Rice SNP Panel

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Rice SNP Panel

Rice SNP genotyping is a powerful tool that allows for the analysis of genetic diversity, marker-assisted selection, QTL mapping, genomic selection, and genome-wide association studies. By examining single nucleotide changes in the rice genome, SNP genotyping enables researchers and breeders to understand the genetic composition of rice populations, select plants with desirable traits, identify genomic regions associated with complex traits, predict breeding values, and uncover trait associations. Our Rice SNP Panel accelerates rice breeding efforts, enhances genetic improvement, and contributes to the development of improved rice varieties.

Product Information

Our panel offers comprehensive insights into rice genetic diversity, with 1,040 markers encompassing genomic screens, trait-related markers, and purity markers. The panel underwent rigorous revision, removing the 48 lowest-performing SNPs, and adding 133 new SNPs targeting over 90 genes and QTLs of interest. This advanced panel empowers researchers and breeders to make informed decisions, optimize hybrid development, and contribute to improving rice varieties.

Key Features

Genomic Screen: This section comprises 797 SNPs sourced from the Cornell 6K Array Infinium Rice chip and the 3,000 Rice Genomes Project. These markers are evenly distributed across the rice genome and have been carefully selected based on a call rate higher than 95% and high minor allele frequencies (MAF≥0.4).
Trait-Related Markers: In this section, we have included 205 SNPs associated with various important trait genes/QTLs. These markers enable researchers and breeders to investigate the genetic basis of specific traits and make informed decisions during the breeding process.
Purity Markers: To ensure genetic purity, identity, and hybridity, we have incorporated 22 SNPs known for their discriminatory ability among elite indica material. These markers play a crucial role in determining the genetic integrity of rice varieties.

Specifications

Workflow Step	Amplicon Sequencing
Format	dsDNA
Content	797 SNPs, targets 90 genes and QTLs
Application	Identify and track specific traits, genes, and variations
Storage	Store at -5 to -30°C

Increase Confidence in Your Rice SNPs Research

Genetic Diversity Analysis: The panel enables comprehensive analysis of genetic diversity within rice populations. By genotyping a large number of Single Nucleotide Polymorphisms (SNPs) distributed throughout the rice genome, researchers can assess the genetic variations, relatedness, and population structure of different rice varieties.
Marker-Assisted Breeding: The SNP markers in the panel can be utilized for marker-assisted breeding programs. Breeders can select parental lines based on their desired genetic traits, predict hybrid performance, and optimize the development of new rice varieties with improved agronomic traits, disease resistance, and quality characteristics.
Trait Mapping and QTL Analysis: The Rice SNP Panel includes markers associated with important trait genes and Quantitative Trait Loci (QTLs). Researchers can use these markers to identify and map the genetic regions responsible for specific traits of interest, such as yield potential, tolerance to abiotic and biotic stresses, grain quality, and nutritional characteristics.
Population Genetics Studies: The panel allows for population genetics studies in rice, providing insights into evolutionary relationships, migration patterns, and demographic history of rice populations. This information is valuable for understanding the genetic structure, diversity, and adaptation of rice varieties across different regions.
Genetic Purity Assessment: The inclusion of purity markers in the panel enables the determination of genetic purity, identity, and hybridity of rice samples. This is crucial for maintaining the integrity and authenticity of rice varieties, particularly in seed production and certification processes.
Genomic Selection and Prediction: By combining genotypic data from the Rice SNP Panel with phenotypic information, genomic selection models can be developed. These models allow for accurate prediction of the performance of untested individuals, speeding up the breeding process by enabling early selection of superior genotypes.
Research Collaboration and Data Sharing: Our Rice SNP Panel promotes collaboration among researchers by providing a standardized genotyping platform. The generated genotypic data can be shared with the wider scientific community, facilitating data integration, meta-analyses, and further advancements in rice research.

Our Rice SNP Panel empowers researchers and breeders with essential genetic insights, accelerating the development of superior rice varieties and contributing to the sustainable and resilient cultivation of this vital crop. CD Genomics not only has the ability to provide agricultural sequencing Panels, but also relies on our in-house laboratory to provide you with a range of genotyping services and analysis.

For Research Use Only.